Publications

Maternal exposure to heat and its association with miscarriage in rural KwaZulu-Natal, South Africa: A population-based cohort study
Moodley Y, Asare K, Tanser FC, Tomita A

Women's Health

(2024)

https://doi.org/10.1177/17455057241259171
Facility-based indicators to manage and scale up cervical cancer prevention and care services for women living with HIV in sub-Saharan Africa: a three-round online Delphi consensus method
Davidović M, Asangbeh SL, Taghavi K, Dhokotera T, Jaquet A, Musick B, van Schalkwyk C, Schwappach D, Rohner E, Murenzi G, Wools-Kaloustian K, Anastos K, Omenge OE, Boni SP, Duda SN, von Groote P, Bohlius J, International Epidemiology Databases to Evaluate AIDS

Journal of Acquired Immune Deficiency Syndromes

(2024)

https://doi.org/10.1097/QAI.0000000000003343
Accumulation of immunity in heavy-tailed sexual contact networks shapes Mpox outbreak sizes
Murayama H, Pearson CAB, Abbott S, Miura F, Jung S, Fearon E, Funk S, Endo A

Journal of Infectious Diseases

(2024)

https://doi.org/10.1093/infdis/jiad254
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic
Sherratt K, Carnegie AC, Kucharski A, Cori A, Pearson CAB, Jarvis CI, Overton C, Weston D, Hill EM, Knock E, Fearon E, Nightingale E, Hellewell J, Edmunds WJ, Arenas JV, Prem K, Pi L, Baguelin M, Kendall M, Ferguson N, Davies N, Eggo RM, van Elsland S, Russel T, Funk S, Liu Y, Abbott S

Wellcome Open Research

(2024)

https://doi.org/10.12688/wellcomeopenres.19601.1
Reducing initial loss to follow-up among people with bacteriologically confirmed tuberculosis: LINKEDin, a quasi-experimental study in South Africa
Meehan S, Hesseling A, Boulle A, Chetty J, Connell L, Dlamini-Miti N, Dunbar R, Du Preez K, George G, Hoddinott G, Jennings K, Marx F, Mudaly V, Naidoo P, Ndlovu N, Ngozo J, Smith M, Strauss M, Tanna G, Vanqa N, Von Delft A, Osman M

Open Forum Infectious Diseases

(2024)

https://doi.org/10.1093/ofid/ofad648
A scoping review and taxonomy of epidemiological-macroeconomic models of COVID-19
Bonnett G, Pearson CAB, Torres-Rueda S, Ruiz F, Lines J, Jit M, Vassall A, Sweeney S

Value in Health

(2024)

https://doi.org/10.1016/j.jval.2023.10.008
Updated data and methods for the 2023 UNAIDS HIV estimates
van Schalkwyk C, Mahy M, Johnson LF, Imai-Eaton JW

Journal of Acquired Immune Deficiency Syndromes

(2024)

https://doi.org/10.1097/QAI.0000000000003344
Model-based assessment of elastic material parameters in rheumatic heart disease patients and healthy subjects
Familusi MA, Skatulla S, Hussan JR, Aremu OO, Mutithu D, Lumngwena EN, Gumedze FN, Ntusi NAB

Mathematical and Computational Applications

(2023)

https://doi.org/10.3390/mca28060106
Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves
Bingham JL, Tempia S, Moultrie H, Viboud C, Jassat W, Cohen C, Pulliam JRC

PLOS ONE

(2023)

https://doi.org/10.1371/journal.pone.0287026
Modelling presymptomatic Infectiousness in COVID-19
Cheng R, Dye C, Dagpunar JS, Williams BG

Journal of Simulation

(2023)

https://doi.org/10.1080/17477778.2023.2190467
Evidence of HIV incidence reduction in young women, but not in adolescent girls, in KwaZulu-Natal, South Africa
Mhlanga L, Welte A, Grebe PE, Ohler L, van Cutsem G, Huerga H, Conan N

IJID Regions

(2023)

https://doi.org/10.1016/j.ijregi.2023.07.004
Provision of HIV prevention and care services to farmworkers in sub-Saharan African countries
Mlangeni N, Adetokunboh OO, Lembani M, Maloltle M, Ngah V, Nyasulu PS

Tropical Medicine and International Health

(2023)

https://doi.org/10.1111/tmi.13922
Risk factors for breast cancer among women in Ekurhuleni Metropolitan Municipality, Gauteng province of South Africa, 2017‒2020: a case-control study
Mashele ZA, Zwane TB, Kuonza L, Muchengeti M, Motsuku L

ecancermedicalscience

(2023)

https://doi.org/10.3332/ecancer.2023.1593
The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making
Iwu-Jaja C, Ndlovu NL, Rachida S, Yousif M, Taukobong S, Macheke M, Mhlanga L, van Schalkwyk C, Pulliam JRC, Moultrie T, le Roux W, Schaefer L, Pocock G, Coetzee LZ, Mans J, Bux F, Pillay L, de Villiers D, du Toit AP, Jambo D, Gomba A, Groeninck S, Madgewick N, van der Walt M, Mutshembele A, Berkowitz N, Suchard M, McCarthy K

Science of the Total Environment

(2023)

https://doi.org/10.1016/j.scitotenv.2023.165817
What will it take for an injectable ARV to change the face of the HIV epidemic in high-prevalence countries? Considerations regarding drug costs and operations.
Meyer-Rath G, Jamieson L, Pillay Y

Journal of the International AIDS Society

(2023)

https://doi.org/10.1002/jia2.26106
The role of modelling in planning and budgeting for South Africa’s COVID-19 response
Silal SP, Pulliam JRC, Jamieson L, Nichols B, Moultrie H, Meyer-Rath G

PLOS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001063
Integration of point-of-care screening for type 2 diabetes mellitus and hypertension with COVID-19 rapid antigen screening in Johannesburg, South Africa
Brennan AT, Vetter B, Majam M, Msolomba VT, Venter F, Carmona S, Kao K, Gordon A, Meyer-Rath G

PLoS ONE

(2023)

https://doi.org/10.1371/journal.pone.0287794
The role of modelling and analytics in South African COVID-19 planning and budgeting
Meyer-Rath G, Hounsell RA, Pulliam JRC, Jamieson L, Nichols BE, Moultrie H, Silal SP

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001063
Deep learning approaches to landmark detection in tsetse wing images
Geldenhuys DS, Josias S, Brink W, Makhubele M, Hui C, Landi P, Bingham JL, Hargrove JW, Hazelbag CM

PLoS Computational Biology

(2023)

https://doi.org/10.1371/journal.pcbi.1011194
Evaluation of Ortho VITROS and Roche Elecsys S and NC Immunoassays for SARS-CoV-2 Serosurveillance Applications
Sulaeman H, Grebe PE, Dave H, McCann L, Di Germanio C, Sanghavi A, Sclar V, Bougie DW, Chatelain G, Biggerstaff BJ, Jones JM, Thornburg NJ, Kleinman S, Stone M, Busch MP

Microbiology Spectrum

(2023)

https://doi.org/10.1128/spectrum.03234-22
Neonatal sepsis: Challenges in data access, harmonisation and analysis to inform empirical antibiotic recommendations in South African neonatal units
Bolton L, Bekker A, Govender N, van Schalkwyk C, Whitelaw A, Dramowski A

Southern African Journal of Public Health

(2023)

https://doi.org/10.7196/SAJPH.2023.v6.i2.175
Investigating the unaccounted ones: insights on age-dependent reproductive loss in a viviparous fly
English S, Barreaux AMG, Leyland R, Lord JL, Hargrove JW, Vale GA, Haines L

Frontiers in Ecology and Evolution

(2023)

https://doi.org/10.3389/fevo.2023.1057474
Differential in-hospital mortality and intensive care treatment over time: Informing hospital pathways for modelling COVID-19 in South Africa
Jamieson L, van Schalkwyk C, Nichols BE, Meyer-Rath G, Silal SP, Pulliam JRC, Blumberg L, Cohen C, Moultrie H, Jassat W

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001073
Improved models for the relationship between age and the probability of trypanosome infection in female tsetse, Glossina pallidipes Austen
Hargrove JW, van Sickle J

Bulletin of Entomological Research

(2023)

https://doi.org/10.1017/S0007485323000159
Multiple models for outbreak decision support in the face of uncertainty
Shea K, Borchering RK, Probert WJM, Howerton E, Bogich T, Li S, Van Panhuis WG, Viboud C, Aguas R, Pearson CAB, et al

Proceedings of the National Academy of Sciences

(2023)

https://doi.org/10.1073/pnas.2207537120

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Publications

Maternal exposure to heat and its association with miscarriage in rural KwaZulu-Natal, South Africa: A population-based cohort study

Facility-based indicators to manage and scale up cervical cancer prevention and care services for women living with HIV in sub-Saharan Africa: a three-round online Delphi consensus method

Accumulation of immunity in heavy-tailed sexual contact networks shapes Mpox outbreak sizes

Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic

Reducing initial loss to follow-up among people with bacteriologically confirmed tuberculosis: LINKEDin, a quasi-experimental study in South Africa

A scoping review and taxonomy of epidemiological-macroeconomic models of COVID-19

Updated data and methods for the 2023 UNAIDS HIV estimates

Model-based assessment of elastic material parameters in rheumatic heart disease patients and healthy subjects

Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves

Modelling presymptomatic Infectiousness in COVID-19

Evidence of HIV incidence reduction in young women, but not in adolescent girls, in KwaZulu-Natal, South Africa

Provision of HIV prevention and care services to farmworkers in sub-Saharan African countries

Risk factors for breast cancer among women in Ekurhuleni Metropolitan Municipality, Gauteng province of South Africa, 2017‒2020: a case-control study

The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making

What will it take for an injectable ARV to change the face of the HIV epidemic in high-prevalence countries? Considerations regarding drug costs and operations.

The role of modelling in planning and budgeting for South Africa’s COVID-19 response

Integration of point-of-care screening for type 2 diabetes mellitus and hypertension with COVID-19 rapid antigen screening in Johannesburg, South Africa

The role of modelling and analytics in South African COVID-19 planning and budgeting

Deep learning approaches to landmark detection in tsetse wing images

Evaluation of Ortho VITROS and Roche Elecsys S and NC Immunoassays for SARS-CoV-2 Serosurveillance Applications

Neonatal sepsis: Challenges in data access, harmonisation and analysis to inform empirical antibiotic recommendations in South African neonatal units

Investigating the unaccounted ones: insights on age-dependent reproductive loss in a viviparous fly

Differential in-hospital mortality and intensive care treatment over time: Informing hospital pathways for modelling COVID-19 in South Africa

Improved models for the relationship between age and the probability of trypanosome infection in female tsetse, Glossina pallidipes Austen

Multiple models for outbreak decision support in the face of uncertainty

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