Pulliam JRC

Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves
Bingham JL, Tempia S, Moultrie H, Viboud C, Jassat W, Cohen C, Pulliam JRC

PLOS ONE

(2023)

https://doi.org/10.1371/journal.pone.0287026
The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making
Iwu-Jaja C, Ndlovu NL, Rachida S, Yousif M, Taukobong S, Macheke M, Mhlanga L, van Schalkwyk C, Pulliam JRC, Moultrie T, le Roux W, Schaefer L, Pocock G, Coetzee LZ, Mans J, Bux F, Pillay L, de Villiers D, du Toit AP, Jambo D, Gomba A, Groeninck S, Madgewick N, van der Walt M, Mutshembele A, Berkowitz N, Suchard M, McCarthy K

Science of the Total Environment

(2023)

https://doi.org/10.1016/j.scitotenv.2023.165817
The role of modelling and analytics in South African COVID-19 planning and budgeting
Meyer-Rath G, Hounsell RA, Pulliam JRC, Jamieson L, Nichols BE, Moultrie H, Silal SP

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001063
Differential in-hospital mortality and intensive care treatment over time: Informing hospital pathways for modelling COVID-19 in South Africa
Jamieson L, van Schalkwyk C, Nichols BE, Meyer-Rath G, Silal SP, Pulliam JRC, Blumberg L, Cohen C, Moultrie H, Jassat W

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001073
The National COVID-19 Epi Model (NCEM): estimating cases, admissions and deaths for the first wave of COVID-19 in South Africa
Silal SP, Pulliam JRC, Meyer-Rath G, Jamieson L, Nichols BE, Norman J, Hounsell R, Mayet S, Kagoro F, Moultrie H

PLoS Global Public Health

(2023)

https://doi.org/10.1371/journal.pgph.0001070
The role of modelling and analytics in South African COVID-19 planning and budgeting
Meyer-Rath G, Hounsell RA, Pulliam JRC, Jamieson L, Nichols BE, Moultrie H, Silal SP

medRxiv

(2022)

https://doi.org/10.1101/2022.08.23.22279123
Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves
Bingham JL, Tempia S, Moultrie H, Viboud C, Jassat W, Cohen C, Pulliam JRC

medRxiv

(2022)

https://doi.org/10.1101/2022.07.22.22277932
Leveraging epidemiology as a decision support tool during the COVID-19 epidemic in South Africa
Silal SP, Groome MJ, Govender N, Pulliam JRC, Ramadan PC, Jassat W, Leonard E, Moultrie H, Meyer-Rath G, Ramkrishna W, Langa T, Furumele T, Moonasar D, Cohen C, Walaza S

The South African Medical Journal

(2022)

https://doi.org/10.7196/SAMJ.2022.v112i5b.16061
Models and modelling practices for assessing the impact of outbreak response interventions to human vaccine-preventable diseases (1970-2019) – A systematic review
Azam JM, Pang X, Are EB, Pulliam JRC, Ferrari MJ

medRxiv

(2022)

https://doi.org/10.1101/2022.05.27.22275642
Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa
Pulliam JRC, van Schalkwyk C, Govender N, von Gottberg A, Cohen C, Groome MJ, Dushoff J, Mlisana K, Moultrie H

Science

(2022)

https://doi.org/10.1126/science.abn4947
The direct and indirect effects of the COVID-19 pandemic on private healthcare utilization in South Africa, March 2020 – September 2021
Perofsky AC, Tempia S, Bingham JL, Maslo C, Toubkin M, Laubscher A, Walaza S, Pulliam JRC, Viboud C, Cohen C

Clinical Infectious Diseases

(2022)

https://doi.org/10.1093/cid/ciac055
Bounding the levels of transmissibility & immune evasion of the Omicron variant in South Africa
Pearson CAB, Silal SP, Li MWZ, Dushoff J, Bolker BM, Abbott S, van Schalkwyk C, Davies NG, Barnard RC, Edmunds WJ, Bingham JL, Meyer-Rath G, Glass A, Wolter N, Govender N, Stevens W, Scott L, Mlisana K, Moultrie H, Pulliam JRC

medRxiv

(2021)

https://doi.org/10.1101/2021.12.19.21268038
Characterising differences in red blood cell usage patterns between healthcare sectors in South Africa: 2014-2019
Bolton L, van den Berg K, Swanevelder R, Pulliam JRC

Blood Transfusion

(2021)

https://doi.org/10.2450/2021.0209-21
SARS CoV-2 reinfection trends in South Africa: analysis of routine surveillance data
Pulliam JRC, van Schalkwyk C, Govender N, von Gottberg A, Cohen C, Groom M, Dushoff J, Mlisana K, Moultrie H

medRxiv

(2021)

https://doi.org/10.1101/2021.11.11.21266068
Mind the gap: patterns of red blood cell product usage in South Africa, 2014 – 2019
Bolton L, van den Berg K, Swanevelder R, Pulliam JRC

The South African Medical Journal

(2021)

https://doi.org/10.7196/SAMJ.2021.v111i10.15658
Modelling the relative benefits of using the measles vaccine outside cold chain for outbreak response
Azam JM, Saitta B, Bonner K, Ferrari MJ, Pulliam JRC

Vaccine

(2021)

https://doi.org/10.1016/j.vaccine.2021.08.053
Strategic testing approaches for targeted disease monitoring can be used to inform pandemic decision-making
Nichols JD, Bogich TL, Howerton E, BjÃ¸rnstad ON, Borchering RK, Ferrari MJ, Haran M, Jewell C, Pepin KM, Probert WJM, Pulliam JRC, Runge MC, Tildesley MJ, Viboud C, Shea K

PLoS Biology

(2021)

https://doi.org/10.1371/journal.pbio.3001307
Pre-vaccination testing could expand coverage of two-dose COVID vaccines
Pearson CAB, Pulliam JRC, Eggo RM

Wellcome Open Research

(2021)

https://doi.org/10.12688/wellcomeopenres.16835.1
African based researchers’ output on models for the transmission dynamics of infectious diseases and public health interventions: A scoping review
Adetokunboh OO, Mthombothi ZE, Dominic EM, Djomba-Njankou S, Pulliam JRC

PLoS One

(2021)

https://doi.org/10.1371/journal.pone.0250086
Cost-effectiveness of Remdesivir and Dexamethasone for COVID-19 treatment in South Africa
Youngji J, Jamieson L, Edoka I, Long L, Silal SP, Pulliam JRC, Moultrie H, Sanne I, Meyer-Rath G, Nichols BE

Open Forum Infectious Diseases

(2021)

https://doi.org/10.1093/ofid/ofab040
Outbreak response intervention models of vaccine-preventable diseases in humans and foot-and-mouth disease in livestock: a protocol for a systematic review.
Azam JM, Are EB, Pang X, Ferrari MJ, Pulliam JRC

BMJ Open

(2020)

https://doi.org/10.1136/bmjopen-2019-036172
Key questions for modelling COVID-19 exit strategies
Robin NT, Hollingsworth TD, Isham V, Arribas-Bel D, Ashby B, Britton T, Challenor P, Chappell LHK, Clapham H, Cunniffe NJ, Dawid AP, Donnelly CA, Eggo RM, Funk S, Gilbert N, Glendinning P, Gog JR, Hart WS, Heesterbeek H, House T, Keeling M, Kiss IZ, Kretzschmar ME, Lloyd AL, McBryde ES, McCaw JM, McKinley TJ, Miller JC, Morris M, O'Neill PD, Parag KV, Pearson CAB, Pellis L, Pulliam JRC, Ross V, Tomba GS, Silverman BW, Struchiner CJ, Tildesley MJ, Trapman P, Webb CR, Mollison D, Restif O

Proceedings of the Royal Society

(2020)

https://doi.org/10.1098/rspb.2020.1405
Key questions for modelling COVID-19 exit strategies
Robin NT, Hollingsworth TD, Isham V, Arribas-Bel D, Ashby B, Britton T, Challenor P, Chappell LHK, Clapham H, Cunniffe NJ, Dawid AP, Donnelly CA, Eggo RM, Funk S, Gilbert N, Glendinning P, Gog JR, Hart WS, Heesterbeek H, House T, Keeling M, Kiss IZ, Kretzschmar ME, Lloyd AL, McBryde ES, McCaw JM, McKinley TJ, Miller JC, Morris M, O'Neill PD, Parag KV, Pearson CAB, Pellis L, Pulliam JRC, Ross V, Tomba GS, Silverman BW, Struchiner CJ, Tildesley MJ, Trapman P, Webb CR, Mollison D, Restif O

Proceedings of the Royal Society

(2020)

https://doi.org/10.1098/rspb.2020.1405
The role of remdesivir in South Africa: preventing COVID-19 deaths through increasing intensive care unit capacity
Nichols BE, Jamieson L, Zhang SRC, Rao GA, Silal SP, Pulliam JRC, Sanne I, Meyer-Rath G

Clinical Infectious Diseases

(2020)

https://doi.org/10.1093/cid/ciaa937
Projected early spread of COVID-19 in Africa through 1 June 2020
Pearson CAB, van Schalkwyk C, Foss AM, O'Reilly KM, SACEMA's Modelling Analysis Response Team, CMMID COVID-19 Working Group, Pulliam JRC

Eurosurveillance

(2020)

https://doi.org/10.2807/1560-7917.ES.2020.25.18.2000543

12 Next

Pulliam JRC

Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves

The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making

The role of modelling and analytics in South African COVID-19 planning and budgeting

Differential in-hospital mortality and intensive care treatment over time: Informing hospital pathways for modelling COVID-19 in South Africa

The National COVID-19 Epi Model (NCEM): estimating cases, admissions and deaths for the first wave of COVID-19 in South Africa

The role of modelling and analytics in South African COVID-19 planning and budgeting

Estimating the time-varying reproduction number for COVID-19 in South Africa during the first four waves using multiple measures of incidence for public and private sectors across four waves

Leveraging epidemiology as a decision support tool during the COVID-19 epidemic in South Africa

Models and modelling practices for assessing the impact of outbreak response interventions to human vaccine-preventable diseases (1970-2019) – A systematic review

Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa

The direct and indirect effects of the COVID-19 pandemic on private healthcare utilization in South Africa, March 2020 – September 2021

Bounding the levels of transmissibility & immune evasion of the Omicron variant in South Africa

Characterising differences in red blood cell usage patterns between healthcare sectors in South Africa: 2014-2019

SARS CoV-2 reinfection trends in South Africa: analysis of routine surveillance data

Mind the gap: patterns of red blood cell product usage in South Africa, 2014 – 2019

Modelling the relative benefits of using the measles vaccine outside cold chain for outbreak response

Strategic testing approaches for targeted disease monitoring can be used to inform pandemic decision-making

Pre-vaccination testing could expand coverage of two-dose COVID vaccines

African based researchers’ output on models for the transmission dynamics of infectious diseases and public health interventions: A scoping review

Cost-effectiveness of Remdesivir and Dexamethasone for COVID-19 treatment in South Africa

Outbreak response intervention models of vaccine-preventable diseases in humans and foot-and-mouth disease in livestock: a protocol for a systematic review.

Key questions for modelling COVID-19 exit strategies

Key questions for modelling COVID-19 exit strategies

The role of remdesivir in South Africa: preventing COVID-19 deaths through increasing intensive care unit capacity

Projected early spread of COVID-19 in Africa through 1 June 2020

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Year

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